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MOST FREQUENTLY USED SITES


ExPASy, Molecular Biology Server - including SWISS-PROT and TrEMBL
PDB - Protein Data Bank
Mouse Genome Informatics
NCBI- National Center for Biotechnology Information
BLAST- Basic Local Alignment Search Tool
IPI- International Protein Index

  • Frontiers in Bioscience - a journal and virtual library
  • IUCr - International Union of Crystallography
  • Pfam - a high-quality comprehensive collection of protein domain families
  • PKR - Protein Kinase Resource. Enzymology, genetics, molecular and structural properties of protein kinases
  • scop - structural classification of proteins
  • INN-PROT, Israeli National Node - Protein Structure Server

    Bioinformatics- A Journal dedicated to Bioinformatics

    kPROT - Membrane Protein Structure Prediction

    Introduction to Making and Using Protein Multiple Alignments


    Aldrin's Biochemistry Site

    My Homepage

     

    Protein
    Sequence
    Databases

    Nucleic
    Acid
    Sequence
    Databases

    Protein
    Structure
    Databases

    Biochemical
    Pathway
    Databases



    Proteome Inc., the online source of information for the budding yeast, Saccharomyces cerevisiae

    Large Scale Biology Corporation

    Oxford Glycosciences

    Genomic Solutions Proteometrics

    Mass Spectrometers for Life Sciences at MicroMass, Inc.


    BioInformatics & Molecular Analysis Section (BIMAS)

    Compute pI/Mw tool

    ExPASy Proteomics tool

    Isotopic Abundance Calculator

    MassSearch : Searching SwissProt or EMBL by protein mass after digestion

    Nucleotide Mass Calculator

    Peptide Mass Search

    PeptideSearch

    Protein Hydrophilicity/Hydrophobicity - Search and Comparison Server

    Prowl : A resource for protein chemistry and mass spectrometry

    IMB Protein Laboratory

    EMBL Protein & Peptide Group

    PPMdb

    University of Aberdeen PROTEIN LAB and PROTEOMICS FACILITY

    PDD (Protein Disease Database)

    Web-based tools, software, data-bases, tutorials and link lists on the Internet, all concerned with various aspects of biocomputing and bioinformatics.

    Bioperl

    This is an effort to develop 'common currency' Perl modules for bioinformatics.

    BioMOO

    An electronic conferencing system for biologists, including a prototype pairwise-alignment demonstration that can be operated in the MOO classroom by many students at the same time.

    Bibiserv

    An Internet server offering online analysis tools for multiple alignment, PCR, etc. A prototype JAVA visual interface has also been developed.

    Internet Biologists

    A virtual platform fostering online education and collaboration in the biological sciences.

    VSNS Biocomputing Division

    VSNS-BCD has run two award-winning courses on bioinformatics via the Internet.

     


    Heart-2D PAGE Site

    Heart Science Centre 2-DE gel protein databases at Harefield Hospital.

    2DWG meta-database

    Scanalytics, Inc. (2D gels)

    Kendrick Labs (2D gels)

    SWISS-2DPAGE


    • Blocks - a database of highly conserved protein regions
    • fssp - table of protein fold families
    • COPE - the Cytokines Online Pathfinder Encyclopedia